PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586633.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 1052aa    MW: 116627 Da    PI: 6.653
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_013586633.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV--RDE 216
                     99*****************************954.4444.48************************************************..456 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_013586633.1 217 KSQLTLGIRRA 227
                     77789999997 PP

2Auxin_resp118.65.2e-39252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+  rr++Gtv+g+sdldpvrW++S+Wr+L+
  XP_013586633.1 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 334
                     799******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41120241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-21125226No hitNo description
SMARTSM010194.3E-24126228IPR003340B3 DNA binding domain
PfamPF023622.0E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492126228IPR003340B3 DNA binding domain
PfamPF065077.3E-34252334IPR010525Auxin response factor
PfamPF023099.3E-109221010IPR033389AUX/IAA domain
PROSITE profilePS5174525.3659241017IPR000270PB1 domain
SuperFamilySSF542773.14E-89381002No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1052 aa     Download sequence    Send to blast
MKAPSNGFHP NPTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ  60
TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS  240
SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF  300
ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP  360
FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM  420
SMQQNNPLSA GAAAATTHLP SSYNLPNNFS PNDHSKLLNF QSPNLSPAIT QFNKPNMVSH  480
ISQQMQAQPA MVQSQQQQQQ QLQQQVQMSH QQLQQQHHQH QQQGGYNSGS VNNGVSVVSN  540
QVSCQNQSAG FTQSQQQSML SNGAKMTHQN MVSAGNKGSS QMTAQELQFQ QQLELHNSTQ  600
LLRNQQEQSS MHSLQQNPQQ LQMQQQQSSK PSPSQQFQLQ LLQKLQQQQQ STPPPVSSSL  660
QPQLSSLQQT QSHQLQQLLS SQNQQPLPQS NNNSFMQPPQ IQASHHQQQG YMNNNKPIVR  720
SQSGHIDGEA PSCSTSPSAN NTGHDNVSPT NFLSRNQQQG QGVSVPASDP VQQGMVNLKS  780
AGEQFKFKAA VTDQIDVTTA GTTYCPDVVV GPGQQQQQTF PLPSFGFDGD LQQSQHPRNS  840
LAFAGNIEAV NPDALYSQKD FQNLVVPNYG NAPRDIETEL SSASQSFGIP SIPFKSGGSN  900
EIGGINDSGI MNGGIWPNQA QRMRTYTKVQ KRGSVGRSID VTRYSGYEEL RNDLARMFGI  960
EGQLEDPQIS DWKLVYTDHE NDILLVGDDP WEEFVNCVQN IKILSSAEVQ QMSLDGDLAA  1020
IPTTNQACSE TDSGNAWKVH YEDTSAAASF NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1711635547388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794840.0JN979484.1 Brassica rapa subsp. pekinensis auxin response factor 19-2 (ARF19-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586633.10.0PREDICTED: auxin response factor 19 isoform X1
SwissprotQ8RYC80.0ARFS_ARATH; Auxin response factor 19
TrEMBLA0A0D3CBG40.0A0A0D3CBG4_BRAOL; Auxin response factor
STRINGBra025720.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19